STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0000820annotation not available (500 aa)    
Predicted Functional Partners:
BN2166_0052340
4HBT domain-containing protein.
  
 
 0.767
BN2166_0058370
Putative electron transfer flavo protein alpha subunit.
    
 0.759
BN2166_0056790
Putative electron transfer flavo protein beta chain.
    
  0.711
BN2166_0043850
Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
     
 0.703
BN2166_0002380
BY PROTMAP: gi|472583500|gb|EMS21133.1| acetyl-CoA carboxylase [Rhodosporidium toruloides NP11].
    
 0.683
BN2166_0042530
Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.683
BN2166_0045400
Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
    
  0.682
BN2166_0054510
HotDog domain-containing protein.
     
 0.681
BN2166_0036880
BY PROTMAP: gi|647398626|emb|CDR42699.1| RHTO0S07e03092g1_1 [Rhodosporidium toruloides].
  
 
 0.679
BN2166_0068480
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain-domain containing protein.
  
 
 0.679
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.