STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0020840Armadillo-type fold. (949 aa)    
Predicted Functional Partners:
BN2166_0044660
RHTO0S02e05424g1_1.
    
 
 0.915
BN2166_0003120
Cytochrome c oxidase assembly protein COX11.
    
   0.900
BN2166_0058500
annotation not available
    
 
 0.689
BN2166_0018140
Endonuclease/exonuclease/phosphatase.
   
 
 0.653
BN2166_0073790
ATP-dependent RNA helicase dhh1; Belongs to the DEAD box helicase family.
   
 
 0.634
BN2166_0050770
Anticodon-binding domain-domain containing protein.
    
   0.631
BN2166_0031430
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 
 0.599
BN2166_0057200
Uncharacterized protein.
    
 
 0.587
BN2166_0038620
Cyclin-dependent protein kinase inhibitor.
    
 
 0.576
BN2166_0018950
40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
    
  0.575
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.