STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0003920FGENESH: predicted gene_1.392 protein. (395 aa)    
Predicted Functional Partners:
BN2166_0036380
CDP-diacylglycerol--inositol 3-phosphatidyltransferase.
    
  0.764
BN2166_0038620
Cyclin-dependent protein kinase inhibitor.
  
  0.727
BN2166_0024050
Inositol-1-monophosphatase.
    
 0.723
BN2166_0047330
Inositol-1-monophosphatase.
    
 0.723
BN2166_0061650
Nicotinamide-nucleotide adenylyltransferase; Belongs to the eukaryotic NMN adenylyltransferase family.
   
 
 0.691
BN2166_0067630
annotation not available
   
 
  0.617
BN2166_0026640
BY PROTMAP: gi|342320902|gb|EGU12840.1| galactokinase [Rhodotorula glutinis ATCC 204091].
  
 0.605
BN2166_0016770
annotation not available
  
 0.605
BN2166_0053240
NAD-P-binding protein.
  
  
  0.598
BN2166_0014700
Pyridoxal-dependent decarboxylase, pyridoxal binding domain-domain containing protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
  0.591
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.