STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0030800CPSF A subunit region-domain containing protein. (1587 aa)    
Predicted Functional Partners:
BN2166_0070010
FGENESH: predicted gene_16.27 protein.
   
 0.997
BN2166_0001790
DWNN domain-domain containing protein.
    
 0.996
BN2166_0035350
BY PROTMAP: gi|342319748|gb|EGU11695.1| Endoribonuclease YSH1 [Rhodotorula glutinis ATCC 204091].
   
 0.996
BN2166_0036390
BY PROTMAP: gi|647398568|emb|CDR42586.1| RHTO0S07e01750g1_1 [Rhodosporidium toruloides].
    
 0.996
BN2166_0047550
Symplekin tight junction protein C terminal-domain containing protein.
    
 0.996
BN2166_0057060
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.996
BN2166_0035190
annotation not available
    
 0.994
BN2166_0067760
WD40-repeat-containing domain protein.
    
 0.993
BN2166_0042600
annotation not available
   
 0.991
BN2166_0070700
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 0.991
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.