STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0022840Ubiquitin-like domain-containing protein. (420 aa)    
Predicted Functional Partners:
BN2166_0054980
BY PROTMAP: gi|647394255|emb|CDR35483.1| RHTO0S01e00254g1_1 [Rhodosporidium toruloides].
   
 0.989
BN2166_0007910
FGENESH: predicted gene_1.791 protein.
   
 0.957
BN2166_0008440
FGENESH: predicted gene_2.13 protein.
    
 0.942
BN2166_0038340
Thioredoxin-like fold.
    
 0.927
BN2166_0058680
BY PROTMAP: gi|647398523|emb|CDR42540.1| RHTO0S07e00760g1_1 [Rhodosporidium toruloides].
    
 
 0.901
BN2166_0061030
BY PROTMAP: gi|342321152|gb|EGU13087.1| mRNA export factor elf1 [Rhodotorula glutinis ATCC 204091].
    
   0.901
BN2166_0061020
P-loop containing nucleoside triphosphate hydrolase protein.
    
   0.901
BN2166_0012780
BY PROTMAP: gi|472587138|gb|EMS24637.1| 60S ribosomal protein l19 [Rhodosporidium toruloides NP11].
   
 0.891
BN2166_0035490
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.889
BN2166_0052060
Uncharacterized protein.
   
 0.889
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.