STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0006770Sperm nuclear basic protein PL-I isoform PLIb. (239 aa)    
Predicted Functional Partners:
BN2166_0041760
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
  
 0.981
BN2166_0051660
Triosephosphate isomerase.
  
 
 0.962
BN2166_0057020
Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
   
 
 0.960
BN2166_0054120
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.945
BN2166_0005990
BY PROTMAP: gi|472588423|gb|EMS25895.1| enolase [Rhodosporidium toruloides NP11].
  
 0.930
BN2166_0017740
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.875
BN2166_0011590
annotation not available
  
 0.870
BN2166_0063280
Glyceraldehyde-3-phosphate dehydrogenase.
  
 0.866
BN2166_0072710
Glyceraldehyde-3-phosphate dehydrogenase.
  
 0.866
BN2166_0052100
annotation not available
  
 0.861
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.