STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0025290FGENESH: predicted gene_5.74 protein. (1104 aa)    
Predicted Functional Partners:
BN2166_0005100
Belongs to the STXBP/unc-18/SEC1 family.
   
 0.996
BN2166_0047950
Pep3/Vps18/deep orange family-domain containing protein.
   
 0.996
BN2166_0045630
annotation not available
   
 0.996
BN2166_0044460
Vacuolar protein sorting-associated protein 41; Required for vacuolar assembly and vacuolar traffic. Belongs to the VPS41 family.
   
 0.996
BN2166_0021140
FGENESH: predicted gene_3.565 protein.
    
 
 0.985
BN2166_0002600
annotation not available
   
 0.975
BN2166_0017950
Vacuolar assembling/sorting protein VPS16.
    
 0.974
BN2166_0055980
annotation not available
    
 0.974
BN2166_0007350
Uncharacterized protein.
    
 
 0.968
BN2166_0032360
BY PROTMAP: gi|342319630|gb|EGU11577.1| Small Rab GTPase Rab7a [Rhodotorula glutinis ATCC 204091].
    
 
 0.968
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.