STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0036400annotation not available (404 aa)    
Predicted Functional Partners:
BN2166_0013250
RanBP1 domain-domain containing protein.
 
 
 0.995
BN2166_0001450
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
   
 0.994
BN2166_0006120
Belongs to the ubiquitin-conjugating enzyme family.
    
 0.986
BN2166_0026830
Uncharacterized protein.
   
 0.986
BN2166_0054980
BY PROTMAP: gi|647394255|emb|CDR35483.1| RHTO0S01e00254g1_1 [Rhodosporidium toruloides].
   
 0.979
BN2166_0052490
Small ubiquitin-related modifier.
    
 0.948
BN2166_0051480
FGENESH: predicted gene_9.494 protein.
    
 0.948
BN2166_0000990
BY PROTMAP: gi|647395595|emb|CDR37142.1| RHTO0S02e11188g1_1 [Rhodosporidium toruloides].
    
 
 0.918
BN2166_0027960
BY PROTMAP: gi|342320953|gb|EGU12891.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091].
   
 0.915
BN2166_0048680
BY PROTMAP: gi|342321353|gb|EGU13287.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091].
   
 0.915
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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