STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0028640FGENESH: predicted gene_5.409 protein. (531 aa)    
Predicted Functional Partners:
BN2166_0007990
Tryptophan synthase.
    
  0.777
BN2166_0009360
annotation not available
    
 0.658
BN2166_0009220
Glutamate-cysteine ligase-domain containing protein.
    
 0.658
BN2166_0011480
Dak1 domain-domain containing protein.
   
 
 0.653
BN2166_0042530
Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.581
BN2166_0042070
Homocysteine S-methyltransferase.
   
 0.560
BN2166_0057190
Glutathione synthetase.
   
 0.555
BN2166_0066910
Putative glycerol kinase; Belongs to the FGGY kinase family.
     
 0.549
BN2166_0014060
S5A_REDUCTASE domain-containing protein.
   
 
 0.544
BN2166_0004140
annotation not available
   
 
  0.528
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.