STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0013920annotation not available (1744 aa)    
Predicted Functional Partners:
BN2166_0069940
annotation not available
   
 0.997
BN2166_0022870
BY PROTMAP: gi|647402234|emb|CDR48516.1| RHTO0S18e01772g1_1 [Rhodosporidium toruloides].
   
 0.994
BN2166_0031430
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 0.993
BN2166_0034070
Translation initiation factor.
   
 0.978
BN2166_0003290
annotation not available
   
 0.974
BN2166_0000600
Uncharacterized protein.
   
 0.973
BN2166_0058680
BY PROTMAP: gi|647398523|emb|CDR42540.1| RHTO0S07e00760g1_1 [Rhodosporidium toruloides].
   
 
 0.955
BN2166_0011170
BY PROTMAP: gi|342319957|gb|EGU11902.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091].
   
 0.946
BN2166_0061490
BY PROTMAP: gi|342321133|gb|EGU13068.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091].
   
 0.946
BN2166_0067500
annotation not available
   
 0.944
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.