STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0028160Replication factor C subunit 4. (438 aa)    
Predicted Functional Partners:
BN2166_0038730
annotation not available
  
0.999
BN2166_0026100
Putative RFC3-DNA replication factor C, 40 kDa subunit.
  
0.998
BN2166_0026670
FGENESH: predicted gene_5.212 protein.
   
0.997
BN2166_0046860
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
  
 0.997
BN2166_0032580
Replication factor C subunit 1.
   
0.996
BN2166_0069100
Rad17 cell cycle checkpoint protein-domain containing protein.
    
 0.996
BN2166_0008170
Checkpoint protein; Belongs to the HUS1 family.
    
 0.984
BN2166_0014180
annotation not available
   
 0.983
BN2166_0044680
BY PROTMAP: gi|647395342|emb|CDR36677.1| RHTO0S02e05380g1_1 [Rhodosporidium toruloides].
   
0.983
BN2166_0047310
Rad9-domain containing protein.
   
 0.982
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.