STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0015570Pyridoxal phosphate-dependent transferase. (444 aa)    
Predicted Functional Partners:
BN2166_0043370
BY PROTMAP: gi|342321572|gb|EGU13505.1| Biotin synthase, BioB [Rhodotorula glutinis ATCC 204091].
 
 
 0.929
BN2166_0007990
Tryptophan synthase.
    
 0.908
BN2166_0069140
annotation not available
  
 0.863
BN2166_0015530
Pyridoxal phosphate-dependent transferase.
 
  
 0.843
BN2166_0054840
Glycine hydroxymethyltransferase.
  
 
 0.839
BN2166_0004990
GPI biosynthesis protein family Pig-F-domain containing protein.
     
 0.835
BN2166_0057590
BY PROTMAP: gi|342320249|gb|EGU12191.1| Oxidoreductase [Rhodotorula glutinis ATCC 204091].
     
 0.835
BN2166_0004000
FGENESH: predicted gene_1.400 protein.
    
 0.826
BN2166_0059640
annotation not available
  
 
 0.824
BN2166_0002720
5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.801
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.