STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0033140annotation not available (584 aa)    
Predicted Functional Partners:
BN2166_0047820
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
  
 0.974
BN2166_0054120
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.971
BN2166_0023130
RHTO0S18e01002g1_1.
  
 
 0.958
BN2166_0058000
BY PROTMAP: gi|647399425|emb|CDR44186.1| RHTO0S09e00980g1_1 [Rhodosporidium toruloides]; Belongs to the universal ribosomal protein uL23 family.
  
 
 0.955
BN2166_0014470
BY PROTMAP: gi|814543697|emb|CEQ38591.1| SPOSA6832_00041, partial [Sporidiobolus salmonicolor]; Belongs to the universal ribosomal protein uS3 family.
  
 
 0.950
BN2166_0035010
FGENESH: predicted gene_6.423 protein.
  
   0.950
BN2166_0015320
BY PROTMAP: gi|647401356|emb|CDR47530.1| RHTO0S14e04940g1_1 [Rhodosporidium toruloides].
  
   0.948
BN2166_0060900
annotation not available
  
   0.944
BN2166_0012780
BY PROTMAP: gi|472587138|gb|EMS24637.1| 60S ribosomal protein l19 [Rhodosporidium toruloides NP11].
  
   0.933
BN2166_0020970
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
  
 
 0.929
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.