STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0031410PXA domain-domain containing protein. (472 aa)    
Predicted Functional Partners:
BN2166_0022330
annotation not available
     
 0.713
BN2166_0044890
BY PROTMAP: gi|342321510|gb|EGU13443.1| SNARE protein YKT6 [Rhodotorula glutinis ATCC 204091]; Belongs to the synaptobrevin family.
     
 0.685
BN2166_0044120
BY PROTMAP: gi|342321543|gb|EGU13476.1| RINT-1 family protein [Rhodotorula glutinis ATCC 204091].
   
 
  0.629
BN2166_0042720
PhoX domain-containing protein.
  
 
0.607
BN2166_0008740
FGENESH: predicted gene_2.43 protein.
     
 0.597
BN2166_0057070
ADP-ribosylation factor; Belongs to the small GTPase superfamily. Arf family.
    
 0.569
BN2166_0047600
FGENESH: predicted gene_9.106 protein; Belongs to the syntaxin family.
     
 0.555
BN2166_0054100
t-SNARE coiled-coil homology domain-containing protein.
    
 0.555
BN2166_0073720
Syntaxin 6, N-terminal-domain containing protein.
    
 0.555
BN2166_0000480
BY PROTMAP: gi|647402938|emb|CDR49126.1| RHTO0S23e01178g1_1 [Rhodosporidium toruloides]; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
     
 0.536
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.