STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0018620HIT-like domain-containing protein. (214 aa)    
Predicted Functional Partners:
BN2166_0015330
annotation not available
  
  0.822
BN2166_0035390
BY PROTMAP: gi|342319749|gb|EGU11696.1| Nitrate reductase [Rhodotorula glutinis ATCC 204091].
  
  0.822
BN2166_0031720
RHTO0S10e07558g1_1.
    
 0.749
BN2166_0072790
SprT-like family-domain containing protein.
    
 0.726
BN2166_0044340
Belongs to the pirin family.
    
 0.699
BN2166_0023890
annotation not available
    
 0.683
BN2166_0046210
Belongs to the protein kinase superfamily.
    
 0.666
BN2166_0065380
BY PROTMAP: gi|342319026|gb|EGU10978.1| CMGC/CDK protein kinase [Rhodotorula glutinis ATCC 204091].
    
 0.666
BN2166_0050150
FGENESH: predicted gene_9.361 protein.
   
 
  0.650
BN2166_0011870
annotation not available
    
  0.636
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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