STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0032830Tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (401 aa)    
Predicted Functional Partners:
BN2166_0040110
Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.861
BN2166_0049150
annotation not available
  
  
 0.767
BN2166_0060010
BY PROTMAP: gi|647397614|emb|CDR40791.1| RHTO0S05e07316g1_1 [Rhodosporidium toruloides].
  
 
 0.691
BN2166_0028740
annotation not available
  
 
 0.653
BN2166_0007990
Tryptophan synthase.
  
  
 0.648
BN2166_0019130
60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.
 
 
    0.626
BN2166_0059080
BY PROTMAP: gi|342321219|gb|EGU13154.1| Leucine-tRNA ligase [Rhodotorula glutinis ATCC 204091].
  
 
 0.622
BN2166_0071360
annotation not available
 
 
 0.612
BN2166_0049850
Tyrosine--tRNA ligase.
  
  
 0.595
BN2166_0058450
BY PROTMAP: gi|647398497|emb|CDR42508.1| RHTO0S07e00188g1_1 [Rhodosporidium toruloides]; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.582
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.