STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0044500annotation not available (1402 aa)    
Predicted Functional Partners:
BN2166_0064510
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.990
BN2166_0068570
Sas10 domain-containing protein.
   
 0.989
BN2166_0009950
Nrap protein-domain containing protein.
   
 0.983
BN2166_0030090
annotation not available
   
 
 0.978
BN2166_0001760
Uncharacterized protein.
   
 0.950
SPB1
AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
   
 0.945
BN2166_0026170
annotation not available
   
 0.938
BN2166_0069880
WD_REPEATS_REGION domain-containing protein.
   
 0.935
BN2166_0047690
Bystin-domain containing protein.
   
 
 0.933
BN2166_0067590
ATP-dependent RNA helicase ROK1; Belongs to the DEAD box helicase family.
  
0.924
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.