STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0035580BY PROTMAP: gi|647397343|emb|CDR40319.1| RHTO0S05e01420g1_1 [Rhodosporidium toruloides]. (818 aa)    
Predicted Functional Partners:
BN2166_0065430
annotation not available
   
 
 0.897
BN2166_0017470
annotation not available
   
 0.895
BN2166_0003210
RNA helicase.
    
 0.858
BN2166_0042740
BY PROTMAP: gi|342321602|gb|EGU13535.1| Pre-mRNA splicing factor [Rhodotorula glutinis ATCC 204091].
    
 0.853
BN2166_0009950
Nrap protein-domain containing protein.
    
 
 0.826
BN2166_0006740
BY PROTMAP: gi|472588344|gb|EMS25816.1| RNA-binding protein 25 [Rhodosporidium toruloides NP11].
  
 
 0.819
BN2166_0048720
BY PROTMAP: gi|342321351|gb|EGU13285.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091].
    
 
 0.819
BN2166_0017370
annotation not available
   
   0.818
BN2166_0057480
FGENESH: predicted gene_11.244 protein.
    
 
 0.818
BN2166_0003130
MIF4G/MA4 domain-containing protein.
   
   0.817
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.