STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0036160PUA-like domain-containing protein. (267 aa)    
Predicted Functional Partners:
BN2166_0043940
annotation not available
   
 
 0.986
BN2166_0043020
BY PROTMAP: gi|814541259|emb|CEQ41475.1| SPOSA6832_03181, partial [Sporidiobolus salmonicolor].
 
 
    0.906
BN2166_0051500
FGENESH: predicted gene_9.496 protein.
   
 
 0.872
BN2166_0065990
Uncharacterized protein.
   
 
 0.872
BN2166_0029360
FGENESH: predicted gene_5.481 protein.
    
   0.744
BN2166_0032930
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
   0.692
RPS1
40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.
    
   0.684
BN2166_0014470
BY PROTMAP: gi|814543697|emb|CEQ38591.1| SPOSA6832_00041, partial [Sporidiobolus salmonicolor]; Belongs to the universal ribosomal protein uS3 family.
    
   0.683
BN2166_0025790
BY PROTMAP: gi|647395678|emb|CDR37295.1| RHTO0S02e13058g1_1 [Rhodosporidium toruloides]; Belongs to the universal ribosomal protein uS17 family.
   
   0.666
BN2166_0013310
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
   
   0.650
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.