STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0036780Uncharacterized protein. (562 aa)    
Predicted Functional Partners:
BN2166_0044690
FGENESH: predicted gene_8.324 protein.
     
 0.794
BN2166_0005030
Aspartate aminotransferase.
     
 0.774
BN2166_0029250
Aspartate aminotransferase.
   
 
 0.767
BN2166_0008010
Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.
    
 0.732
BN2166_0007970
FGENESH: predicted gene_1.797 protein; Belongs to the universal ribosomal protein uS11 family.
    
 0.732
BN2166_0039850
annotation not available
    
 0.682
BN2166_0001510
BY PROTMAP: gi|472586077|gb|EMS23619.1| aspartate aminotransferase [Rhodosporidium toruloides NP11].
     
 0.537
BN2166_0026090
Pyridoxal phosphate-dependent transferase.
     
 0.537
BN2166_0059180
BY PROTMAP: gi|647397525|emb|CDR40601.1| RHTO0S05e05358g1_1 [Rhodosporidium toruloides].
     
 0.537
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.