STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0037330Double-strand siRNA ribonuclease. (436 aa)    
Predicted Functional Partners:
BN2166_0012780
BY PROTMAP: gi|472587138|gb|EMS24637.1| 60S ribosomal protein l19 [Rhodosporidium toruloides NP11].
    
  0.631
BN2166_0053490
FGENESH: predicted gene_10.186 protein; Belongs to the eukaryotic ribosomal protein eL38 family.
     
 0.628
BN2166_0002440
Ribosomal_L7Ae domain-containing protein.
     
 0.625
BN2166_0057880
60S ribosomal protein L4.
    
 0.617
BN2166_0000220
60S ribosomal protein L2.
   
 
  0.614
BN2166_0064150
annotation not available
    
  0.605
BN2166_0031140
BY PROTMAP: gi|342319576|gb|EGU11523.1| 60S ribosomal protein L3 [Rhodotorula glutinis ATCC 204091]; Belongs to the universal ribosomal protein uL3 family.
     
 0.598
BN2166_0052480
Exosome non-catalytic core component.
    
 0.586
BN2166_0042500
Translation protein SH3-like domain-containing protein.
   
 
  0.577
BN2166_0069130
Belongs to the universal ribosomal protein uS9 family.
    
  0.559
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.