STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0037360FGENESH: predicted gene_7.121 protein. (663 aa)    
Predicted Functional Partners:
BN2166_0026830
Uncharacterized protein.
   
 0.999
BN2166_0007340
annotation not available
   
 0.977
BN2166_0048810
Protein transporter SEC13; Belongs to the WD repeat SEC13 family.
    
 0.969
BN2166_0050490
Nucleoporin Nup120/160-domain containing protein.
  
 0.966
BN2166_0051090
BY PROTMAP: gi|647403067|emb|CDR49241.1| RHTO0S24e01596g1_1 [Rhodosporidium toruloides].
   
 0.954
BN2166_0059050
BY PROTMAP: gi|342321222|gb|EGU13157.1| Nucleoporin [Rhodotorula glutinis ATCC 204091]; Belongs to the arginase family.
   
 0.954
BN2166_0036190
annotation not available
   
 0.948
BN2166_0030760
Nucleoporin complex subunit 54-domain containing protein.
   
 0.945
BN2166_0068850
annotation not available
   
 0.945
BN2166_0010190
ELYS domain-containing protein.
   
 0.941
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.