STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0029320RRM domain-containing protein. (339 aa)    
Predicted Functional Partners:
BN2166_0050400
FGENESH: predicted gene_9.386 protein.
   
 
 0.979
BN2166_0023870
Uncharacterized protein.
   
 
 0.965
BN2166_0006950
U3 small nucleolar RNA-associated protein 4.
   
   0.960
BN2166_0026280
annotation not available
   
   0.953
BN2166_0030010
annotation not available
   
 
 0.951
BN2166_0048370
DRIM domain-containing protein.
   
 
 0.945
BN2166_0062470
U3 small nucleolar RNA-associated protein 10.
   
   0.939
BN2166_0005420
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 
 0.938
BN2166_0049580
KRI1-like family C-terminal-domain containing protein.
   
 
 0.890
BN2166_0031700
annotation not available
   
 
 0.887
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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