STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0043480annotation not available (269 aa)    
Predicted Functional Partners:
BN2166_0063840
FGENESH: predicted gene_13.214 protein.
     
 0.858
BN2166_0067910
BY PROTMAP: gi|647402570|emb|CDR48803.1| RHTO0S20e01706g1_1 [Rhodosporidium toruloides].
     
 0.829
BN2166_0031390
FGENESH: predicted gene_6.61 protein.
     
 0.804
BN2166_0004710
FGENESH: predicted gene_1.471 protein.
  
 
 0.773
BN2166_0032230
BY PROTMAP: gi|342319624|gb|EGU11571.1| YjeF-related protein [Rhodotorula glutinis ATCC 204091].
  
 
 0.769
BN2166_0029990
BY PROTMAP: gi|342321043|gb|EGU12981.1| Aldose reductase YakC [Rhodotorula glutinis ATCC 204091].
   
 
 0.438
BN2166_0071550
BY PROTMAP: gi|342320811|gb|EGU12750.1| Aldo/keto reductase [Rhodotorula glutinis ATCC 204091].
   
 
 0.438
BN2166_0005230
annotation not available
 
      0.406
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.