STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0041910BY PROTMAP: gi|814541231|emb|CEQ41447.1| SPOSA6832_03156, partial [Sporidiobolus salmonicolor]; Belongs to the cullin family. (873 aa)    
Predicted Functional Partners:
BN2166_0008440
FGENESH: predicted gene_2.13 protein.
    
 0.995
BN2166_0048390
FGENESH: predicted gene_9.185 protein.
    
 0.980
BN2166_0063360
Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.
   
 0.969
BN2166_0013120
WD40-repeat-containing domain protein.
    
 0.967
BN2166_0067830
FGENESH: predicted gene_15.64 protein.
    
 0.966
BN2166_0030860
Armadillo-type fold.
   
 0.965
BN2166_0025990
annotation not available
    
 0.964
BN2166_0053250
annotation not available
   
 0.958
BN2166_0021760
WD40-repeat-containing domain protein.
    
 0.947
BN2166_0041490
Ubiquitin-conjugating enzyme/RWD-like protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.934
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.