STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0046590Glycoside hydrolase superfamily. (618 aa)    
Predicted Functional Partners:
BN2166_0009000
Phosphotransferase.
   
 0.838
BN2166_0060160
Phosphotransferase.
   
 0.838
BN2166_0015330
annotation not available
     
 0.747
BN2166_0035390
BY PROTMAP: gi|342319749|gb|EGU11696.1| Nitrate reductase [Rhodotorula glutinis ATCC 204091].
     
 0.747
BN2166_0035750
Robl_LC7 domain-containing protein.
   
 0.699
BN2166_0059290
BY PROTMAP: gi|647397537|emb|CDR40626.1| RHTO0S05e05622g1_1 [Rhodosporidium toruloides].
  
 0.668
BN2166_0008870
ATP synthase, Delta/Epsilon chain, beta-sandwich domain-domain containing protein.
    
 0.593
BN2166_0029050
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.577
BN2166_0008780
ATP synthase subunit gamma.
     
 0.528
BN2166_0034590
ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]
     
 0.528
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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