STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0042410FGENESH: predicted gene_8.96 protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1384 aa)    
Predicted Functional Partners:
BN2166_0053870
annotation not available
   
 0.984
BN2166_0053860
RHTO0S01e03026g1_1; Belongs to the calmodulin family.
    
 
 0.926
BN2166_0046400
BY PROTMAP: gi|814539376|emb|CEQ43228.1| SPOSA6832_05138, partial [Sporidiobolus salmonicolor].
    
 
 0.899
BN2166_0067630
annotation not available
   
 
 0.845
BN2166_0010750
Uncharacterized protein.
 
  
 0.801
BN2166_0029240
FGENESH: predicted gene_5.469 protein.
    
 
 0.787
BN2166_0000310
BY PROTMAP: gi|342320602|gb|EGU12541.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091].
    
 
 0.786
BN2166_0032890
annotation not available
    
 
 0.780
BN2166_0036970
Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.
    
 
 0.777
BN2166_0032480
annotation not available
    
0.760
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.