STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0042460annotation not available (425 aa)    
Predicted Functional Partners:
BN2166_0051890
annotation not available
  
 
 0.912
BN2166_0024780
BY PROTMAP: gi|342320825|gb|EGU12763.1| Nitrilase [Rhodotorula glutinis ATCC 204091].
    
 0.802
BN2166_0041820
Nitrilase/cyanide hydratase and apolipo protein N-acyltransferase.
    
 0.802
BN2166_0003330
FGENESH: predicted gene_1.333 protein.
     
 0.800
BN2166_0052940
Malate synthase; Belongs to the malate synthase family.
     
 0.777
BN2166_0005240
Belongs to the glutamine synthetase family.
    
 0.775
BN2166_0011330
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
  0.762
BN2166_0008720
Formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily.
   
 
  0.761
BN2166_0045680
Arginase; Belongs to the arginase family.
     
 0.761
BN2166_0063290
Belongs to the LDH/MDH superfamily.
     
 0.761
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.