STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0042610Metalloenzyme, LuxS/M16 peptidase-like protein. (543 aa)    
Predicted Functional Partners:
BN2166_0055170
BY PROTMAP: gi|647399741|emb|CDR44724.1| RHTO0S09e08020g1_1 [Rhodosporidium toruloides]; Belongs to the peptidase M16 family.
  
0.997
BN2166_0007420
Cytochrome C1 family-domain containing protein.
   
 0.993
BN2166_0023170
Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
 
 0.990
BN2166_0030380
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.
   
 0.982
BN2166_0041390
FGENESH: predicted gene_7.524 protein.
   
 0.981
BN2166_0017460
Cytochrome b-c1 complex subunit 8.
   
 0.973
BN2166_0019560
annotation not available
   
 0.970
BN2166_0063870
COX5A-domain-containing protein.
   
 0.965
BN2166_0023310
annotation not available
   
 0.962
BN2166_0007120
Cytochrome c oxidase polypeptide IV.
   
 0.960
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.