STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0042660BY PROTMAP: gi|342321606|gb|EGU13539.1| Chitin synthase [Rhodotorula glutinis ATCC 204091]. (1477 aa)    
Predicted Functional Partners:
BN2166_0006340
UDP-N-acetylglucosamine diphosphorylase.
   
 0.786
BN2166_0073560
UDP-glucose 6-dehydrogenase.
  
 
 0.712
MDE1
Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P).
      0.665
BN2166_0041430
Acetolactate synthase.
   
 
 0.650
BN2166_0004230
FGENESH: predicted gene_1.423 protein.
   
 0.639
BN2166_0073600
BY PROTMAP: gi|342320330|gb|EGU12271.1| Proteophosphoglycan 5 [Rhodotorula glutinis ATCC 204091].
   
 0.639
BN2166_0001690
annotation not available
   
 0.635
BN2166_0032070
annotation not available
   
 0.631
BN2166_0055010
annotation not available
   
 0.631
BN2166_0000530
annotation not available
   
 0.615
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.