STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0054850annotation not available (800 aa)    
Predicted Functional Partners:
BN2166_0065110
BY PROTMAP: gi|342319042|gb|EGU10994.1| amino acid transporter [Rhodotorula glutinis ATCC 204091].
   
 0.994
BN2166_0064150
annotation not available
   
 0.984
BN2166_0061410
Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 
 0.809
BN2166_0036390
BY PROTMAP: gi|647398568|emb|CDR42586.1| RHTO0S07e01750g1_1 [Rhodosporidium toruloides].
   
 0.759
BN2166_0062470
U3 small nucleolar RNA-associated protein 10.
   
 
  0.738
BN2166_0004750
Uncharacterized protein.
   
 
 0.737
BN2166_0067300
Uncharacterized protein.
   
 
 0.737
BN2166_0000990
BY PROTMAP: gi|647395595|emb|CDR37142.1| RHTO0S02e11188g1_1 [Rhodosporidium toruloides].
   
 0.728
BN2166_0027760
BY PROTMAP: gi|814539628|emb|CEQ43022.1| SPOSA6832_04909 [Sporidiobolus salmonicolor].
   
 0.726
BN2166_0027770
FGENESH: predicted gene_5.322 protein.
   
 0.726
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.