STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0048690annotation not available (913 aa)    
Predicted Functional Partners:
BN2166_0004580
FGENESH: predicted gene_1.458 protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.919
BN2166_0027210
Thiolase-like protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.893
BN2166_0068790
annotation not available
  
 0.893
BN2166_0009060
FGENESH: predicted gene_2.75 protein.
  
 0.888
BN2166_0014100
annotation not available
  
 0.875
BN2166_0059290
BY PROTMAP: gi|647397537|emb|CDR40626.1| RHTO0S05e05622g1_1 [Rhodosporidium toruloides].
  
 0.869
BN2166_0002740
BY PROTMAP: gi|824366548|gb|KLJ08808.1| acetyl-CoA C-acetyltransferase [Emmonsia parva UAMH 139].
  
 0.862
BN2166_0002730
FGENESH: predicted gene_1.273 protein.
  
 0.862
BN2166_0006210
Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.850
BN2166_0037300
Thiolase, N-terminal domain-domain containing protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.850
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.