STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0047080Carbohydrate-binding module family 13 protein. (313 aa)    
Predicted Functional Partners:
BN2166_0052160
BY PROTMAP: gi|647394553|emb|CDR35784.1| RHTO0S01e07030g1_1 [Rhodosporidium toruloides].
    
 0.725
BN2166_0013190
annotation not available
   
 0.704
BN2166_0005500
BY PROTMAP: gi|647396266|emb|CDR38290.1| RHTO0S03e07712g1_1 [Rhodosporidium toruloides].
    
 0.695
BN2166_0006810
BY PROTMAP: gi|342320670|gb|EGU12609.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091].
    
 0.695
BN2166_0014120
Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.619
BN2166_0063540
annotation not available
    
 0.613
BN2166_0045250
AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.
    
 0.594
BN2166_0019920
annotation not available
    
 0.593
BN2166_0046770
BY PROTMAP: gi|342320021|gb|EGU11965.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091].
    
 0.593
BN2166_0038930
BY PROTMAP: gi|814542916|emb|CEQ39947.1| SPOSA6832_01515, partial [Sporidiobolus salmonicolor]; Belongs to the adaptor complexes medium subunit family.
    
 0.578
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.