STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0057500PCI domain-containing protein. (1445 aa)    
Predicted Functional Partners:
BN2166_0053250
annotation not available
  
 0.999
BN2166_0000750
Putative COP9 signalosome complex subunit 2.
  
 0.998
BN2166_0001490
FGENESH: predicted gene_1.149 protein.
   
 0.998
BN2166_0054230
PCI domain-containing protein.
   
 0.998
BN2166_0071700
26S proteasome subunit RPN7-domain containing protein.
   
 0.997
BN2166_0033650
PCI domain-containing protein.
  
 0.995
BN2166_0048390
FGENESH: predicted gene_9.185 protein.
   
 0.980
BN2166_0067830
FGENESH: predicted gene_15.64 protein.
   
 0.956
BN2166_0032610
Belongs to the cullin family.
    
 0.940
BN2166_0072630
Eukaryotic translation initiation factor 3 subunit F; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
   
 0.926
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.