STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0050890annotation not available (987 aa)    
Predicted Functional Partners:
BN2166_0019090
FGENESH: predicted gene_3.360 protein.
    
 
 0.640
BN2166_0004620
annotation not available
    
 
 0.525
BN2166_0043100
FGENESH: predicted gene_8.165 protein.
    
 
 0.525
BN2166_0072040
WD40-repeat-containing domain protein.
    
 
 0.503
BN2166_0026160
annotation not available
    
 
 0.443
BN2166_0044830
BY PROTMAP: gi|727140648|emb|CEG76916.1| Putative Histone deacetylase RPD3 [Rhizopus microsporus].
    
 
 0.443
BN2166_0044820
FGENESH: predicted gene_8.337 protein.
    
 
 0.443
BN2166_0013750
Uncharacterized protein.
    
 
 0.438
BN2166_0031590
BY PROTMAP: gi|342319606|gb|EGU11553.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091].
    
 
 0.424
BN2166_0071950
BY PROTMAP: gi|647396450|emb|CDR38666.1| RHTO0S03e11914g1_1 [Rhodosporidium toruloides].
    
 
 0.424
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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