STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0052490Small ubiquitin-related modifier. (102 aa)    
Predicted Functional Partners:
BN2166_0006120
Belongs to the ubiquitin-conjugating enzyme family.
   
 0.983
BN2166_0026830
Uncharacterized protein.
   
 0.982
BN2166_0015440
BY PROTMAP: gi|647401368|emb|CDR47556.1| RHTO0S14e05204g1_1 [Rhodosporidium toruloides].
    
 0.974
BN2166_0046580
annotation not available
   
 0.973
BN2166_0000990
BY PROTMAP: gi|647395595|emb|CDR37142.1| RHTO0S02e11188g1_1 [Rhodosporidium toruloides].
    
 0.970
BN2166_0053350
Ubiquitin-activating enzyme E1-like; Belongs to the ubiquitin-activating E1 family.
   
 0.967
BN2166_0046860
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.963
BN2166_0036400
annotation not available
    
 0.948
BN2166_0068150
FGENESH: predicted gene_15.96 protein.
    
 0.918
BN2166_0067830
FGENESH: predicted gene_15.64 protein.
   
 0.911
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.