STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0050830FGENESH: predicted gene_9.429 protein. (436 aa)    
Predicted Functional Partners:
BN2166_0019480
NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.
 
 
 
 0.924
BN2166_0003840
FGENESH: predicted gene_1.384 protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
  
 0.865
BN2166_0015330
annotation not available
   
 
0.836
BN2166_0035390
BY PROTMAP: gi|342319749|gb|EGU11696.1| Nitrate reductase [Rhodotorula glutinis ATCC 204091].
   
 
0.836
BN2166_0058890
BY PROTMAP: gi|472587497|gb|EMS24993.1| cytochrome b5 reductase 4 [Rhodosporidium toruloides NP11]; Belongs to the cytochrome b5 family.
   
 
 0.835
BN2166_0003330
FGENESH: predicted gene_1.333 protein.
   
 
 0.830
BN2166_0021600
annotation not available
     
 0.816
BN2166_0073280
Putative Phosphoadenylyl-sulfate reductase Thioredoxin.
     
 0.786
BN2166_0061140
annotation not available
     
 0.765
BN2166_0045930
BY PROTMAP: gi|647397094|emb|CDR39862.1| RHTO0S04e11056g1_1 [Rhodosporidium toruloides].
    
 0.750
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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