STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0051510GDP dissociation inhibitor-domain containing protein. (595 aa)    
Predicted Functional Partners:
BN2166_0032270
FGENESH: predicted gene_6.149 protein.
    
 0.980
BN2166_0032130
BY PROTMAP: gi|595441971|gb|EXX54114.1| Ypt7p [Rhizophagus irregularis DAOM 197198w].
    
 0.965
BN2166_0027250
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.933
BN2166_0022600
Putative GTP-binding protein ypt1.
    
 0.816
BN2166_0044440
Ras family-domain containing protein.
    
 0.794
BN2166_0031930
GTP-binding protein, SEC4.
    
 0.789
BN2166_0037050
Uncharacterized protein.
    
 0.789
BN2166_0032360
BY PROTMAP: gi|342319630|gb|EGU11577.1| Small Rab GTPase Rab7a [Rhodotorula glutinis ATCC 204091].
    
 0.787
BN2166_0025270
annotation not available
    
 0.761
BN2166_0037040
Ras family-domain containing protein.
    
 0.759
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.