STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0054330BY PROTMAP: gi|647394322|emb|CDR35551.1| RHTO0S01e01838g1_1 [Rhodosporidium toruloides]. (534 aa)    
Predicted Functional Partners:
BN2166_0003030
Phosphatidylinositol 3-kinase VPS34.
    
 0.945
BN2166_0070000
SacI homology domain-domain containing protein.
     
 0.931
BN2166_0026330
FGENESH: predicted gene_5.178 protein.
    
 0.923
BN2166_0026320
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.923
BN2166_0036380
CDP-diacylglycerol--inositol 3-phosphatidyltransferase.
  
 0.918
BN2166_0027990
annotation not available
     
 0.915
BN2166_0038350
FGENESH: predicted gene_7.220 protein.
     
 0.912
BN2166_0016480
Phosphoinositide phospholipase C.
    
 0.910
BN2166_0023120
FGENESH: predicted gene_4.88 protein.
   
 
 0.910
BN2166_0036690
Belongs to the PI3/PI4-kinase family.
     
 0.892
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.