STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0052260Belongs to the cyclin family. (651 aa)    
Predicted Functional Partners:
BN2166_0021680
BY PROTMAP: gi|342321674|gb|EGU13606.1| Wee1 [Rhodotorula glutinis ATCC 204091].
   
 0.977
BN2166_0074240
BY PROTMAP: gi|647401048|emb|CDR46990.1| RHTO0S13e04478g1_1 [Rhodosporidium toruloides]; Belongs to the protein kinase superfamily.
 
 
 0.974
BN2166_0010750
Uncharacterized protein.
   
 0.971
BN2166_0036530
Putative 20S cyclosome subunit BimA/Nuc2/Cdc27.
   
 0.968
BN2166_0026830
Uncharacterized protein.
    
  0.967
BN2166_0019750
FGENESH: predicted gene_3.426 protein.
   
 0.963
BN2166_0019760
annotation not available
   
 0.963
BN2166_0045430
Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.
 
 
 0.958
BN2166_0031070
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.948
BN2166_0028730
Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.
   
 0.946
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.