STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0055130BY PROTMAP: gi|342320165|gb|EGU12107.1| Protein kinase Ukc1p [Rhodotorula glutinis ATCC 204091]. (540 aa)    
Predicted Functional Partners:
BN2166_0034850
BY PROTMAP: gi|814541751|emb|CEQ40977.1| SPOSA6832_02642, partial [Sporidiobolus salmonicolor].
    
 0.957
BN2166_0030710
Protein-tyrosine phosphatase-like protein.
   
 0.938
BN2166_0019710
Protein kinase-like domain-containing protein; Belongs to the protein kinase superfamily.
 
  
 
0.907
BN2166_0022830
annotation not available
    
 0.801
BN2166_0057770
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.
    
 
 0.786
BN2166_0053470
BY PROTMAP: gi|599157340|gb|EYE96449.1| ras small GTPase [Aspergillus ruber CBS 135680].
    
 0.739
BN2166_0035500
Camp-dependent protein kinase regulatory subunit.
 
 
 
 0.732
BN2166_0038220
Putative microtubule-associated protein.
    
 
 0.710
BN2166_0066570
mRNA stability protein; Plays an essential role in initiation of the G0 program by preventing the degradation of specific nutrient-regulated mRNAs via the 5'-3' mRNA decay pathway.
 
  
 0.704
BN2166_0039680
Cell division control protein 42.
    
 0.696
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.