STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0055830FGENESH: predicted gene_11.79 protein; Belongs to the universal ribosomal protein uL22 family. (272 aa)    
Predicted Functional Partners:
BN2166_0005160
Ribosomal_L18e/L15P domain-containing protein.
  
 0.997
BN2166_0017850
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.997
BN2166_0019450
Ribosomal protein S9/S16-domain containing protein.
  
 
 0.997
BN2166_0026780
FGENESH: predicted gene_5.223 protein; Belongs to the bacterial ribosomal protein bL17 family.
  
 
 0.997
BN2166_0042500
Translation protein SH3-like domain-containing protein.
  
 0.997
BN2166_0034080
Putative 50s ribosomal protein l19.
   
 
 0.997
BN2166_0036410
BY PROTMAP: gi|647398570|emb|CDR42588.1| RHTO0S07e01794g1_1 [Rhodosporidium toruloides]; Belongs to the universal ribosomal protein uL3 family.
  
 0.997
BN2166_0064140
Ribosomal protein S16-domain containing protein.
   
 
 0.997
BN2166_0073190
50S ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
  
 0.997
BN2166_0058000
BY PROTMAP: gi|647399425|emb|CDR44186.1| RHTO0S09e00980g1_1 [Rhodosporidium toruloides]; Belongs to the universal ribosomal protein uL23 family.
  
 0.996
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.