STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0056830annotation not available (787 aa)    
Predicted Functional Partners:
BN2166_0025760
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
   
 0.991
BN2166_0030500
BY PROTMAP: gi|342321069|gb|EGU13007.1| Cytoplasmic protein [Rhodotorula glutinis ATCC 204091].
   
 0.990
BN2166_0033180
annotation not available
   
 0.978
BN2166_0020970
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 0.977
BN2166_0014470
BY PROTMAP: gi|814543697|emb|CEQ38591.1| SPOSA6832_00041, partial [Sporidiobolus salmonicolor]; Belongs to the universal ribosomal protein uS3 family.
   
 0.967
BN2166_0047820
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
    
 0.959
BN2166_0005670
Protein arginine N-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily.
    
 
 0.943
BN2166_0029350
BY PROTMAP: gi|647399216|emb|CDR43775.1| RHTO0S08e05490g1_1 [Rhodosporidium toruloides]; Belongs to the universal ribosomal protein uS7 family.
   
 0.942
BN2166_0035490
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
    
  0.940
BN2166_0013310
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
  0.939
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.