STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0054660FGENESH: predicted gene_10.303 protein. (1044 aa)    
Predicted Functional Partners:
BN2166_0054320
annotation not available
    
 0.917
BN2166_0019720
Pre-mRNA splicing factor component-domain containing protein.
    
   0.817
BN2166_0067610
annotation not available
    
 0.670
BN2166_0023790
FGENESH: predicted gene_4.155 protein.
    
 0.629
BN2166_0042600
annotation not available
    
 0.629
BN2166_0061200
Glycoside hydrolase family 16 protein.
    
 
 0.515
BN2166_0065430
annotation not available
    
 
 0.515
BN2166_0070480
Concanavalin A-like lectin/glucanase domain-containing protein.
    
 
 0.515
BN2166_0002780
annotation not available
    
 
 0.453
BN2166_0017310
Uncharacterized protein.
    
 
 0.453
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.