STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0059890FGENESH: predicted gene_12.149 protein. (260 aa)    
Predicted Functional Partners:
BN2166_0015330
annotation not available
    
 0.836
BN2166_0035390
BY PROTMAP: gi|342319749|gb|EGU11696.1| Nitrate reductase [Rhodotorula glutinis ATCC 204091].
    
 0.836
BN2166_0002070
Maf-like protein.
     
 0.832
BN2166_0007990
Tryptophan synthase.
    
 0.793
BN2166_0012620
Alpha/Beta hydrolase fold.
   
 0.792
BN2166_0029050
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.708
BN2166_0059430
annotation not available
    
 0.693
BN2166_0045720
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
 0.684
BN2166_0007800
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
    
 0.652
BN2166_0035750
Robl_LC7 domain-containing protein.
  
 0.644
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.