STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0057980annotation not available (428 aa)    
Predicted Functional Partners:
BN2166_0000620
BY PROTMAP: gi|342320614|gb|EGU12553.1| Translation repressor [Rhodotorula glutinis ATCC 204091].
    
 0.863
BN2166_0069460
RNA pol II accessory factor, Cdc73 family-domain containing protein.
    
 0.814
BN2166_0061230
BY PROTMAP: gi|647397743|emb|CDR40979.1| RHTO0S05e10220g1_1 [Rhodosporidium toruloides].
    
 0.798
BN2166_0061370
FGENESH: predicted gene_12.297 protein.
    
 0.798
BN2166_0002400
RNA polymerase II-associated protein.
    
 0.788
BN2166_0004080
Leo1-like protein-domain containing protein.
    
 0.784
BN2166_0000530
annotation not available
    
 0.780
BN2166_0003840
FGENESH: predicted gene_1.384 protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
    
 0.775
BN2166_0066250
annotation not available
    
 0.732
BN2166_0034160
BY PROTMAP: gi|814543230|emb|CEQ39607.1| SPOSA6832_01148 [Sporidiobolus salmonicolor].
    
 0.729
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.