STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0058680BY PROTMAP: gi|647398523|emb|CDR42540.1| RHTO0S07e00760g1_1 [Rhodosporidium toruloides]. (1073 aa)    
Predicted Functional Partners:
BN2166_0061030
BY PROTMAP: gi|342321152|gb|EGU13087.1| mRNA export factor elf1 [Rhodotorula glutinis ATCC 204091].
   
 
 0.996
BN2166_0061020
P-loop containing nucleoside triphosphate hydrolase protein.
  
 
0.996
BN2166_0023130
RHTO0S18e01002g1_1.
   
 
 0.995
BN2166_0055440
FGENESH: predicted gene_11.40 protein.
   
 
 0.995
BN2166_0055430
Elongation factor 1-gamma 1.
   
 
 0.995
BN2166_0020970
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
   
 
 0.994
BN2166_0014470
BY PROTMAP: gi|814543697|emb|CEQ38591.1| SPOSA6832_00041, partial [Sporidiobolus salmonicolor]; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.994
BN2166_0064300
S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.
  
 
 0.994
BN2166_0060040
annotation not available
  
 
 0.994
BN2166_0018950
40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
   
 
 0.993
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.