STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0061790FGENESH: predicted gene_13.9 protein. (1082 aa)    
Predicted Functional Partners:
BN2166_0048600
Belongs to the cytochrome P450 family.
   
 0.755
BN2166_0043810
Molybdopterin binding Aldehyde oxidase/xanthine dehydrogenase.
   
 
 0.753
BN2166_0073560
UDP-glucose 6-dehydrogenase.
     
 0.732
BN2166_0039100
FGENESH: predicted gene_7.295 protein.
    
 0.719
BN2166_0038200
Glycosyltransferase family 21 protein.
     
 0.717
BN2166_0054050
Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  0.717
BN2166_0061290
ATP-NAD kinase-like domain-containing protein.
    
 0.695
BN2166_0050270
Very-long-chain 3-oxoacyl-CoA reductase; Component of the microsomal membrane bound fatty acid elongation system, which produces the 26-carbon very long-chain fatty acids (VLCFA) from palmitate. Catalyzes the reduction of the 3- ketoacyl-CoA intermediate that is formed in each cycle of fatty acid elongation. VLCFAs serve as precursors for ceramide and sphingolipids.
     
 0.692
BN2166_0014060
S5A_REDUCTASE domain-containing protein.
     
 0.686
BN2166_0035750
Robl_LC7 domain-containing protein.
     
 0.686
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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