STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0060010BY PROTMAP: gi|647397614|emb|CDR40791.1| RHTO0S05e07316g1_1 [Rhodosporidium toruloides]. (477 aa)    
Predicted Functional Partners:
BN2166_0029050
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.908
BN2166_0028740
annotation not available
  
  
 
0.903
BN2166_0039620
BY PROTMAP: gi|342320443|gb|EGU12383.1| Spt3 [Rhodotorula glutinis ATCC 204091].
    
 
 0.897
BN2166_0021560
SGF29 C-terminal domain-containing protein.
    
 
 0.889
BN2166_0000460
annotation not available
    
 
 0.881
BN2166_0058210
annotation not available
    
 
 0.881
BN2166_0039750
Histone acetyltransferases subunit 3-domain containing protein.
    
 
 0.876
BN2166_0017130
Ubiquitin carboxyl-terminal hydrolase.
    
   0.875
BN2166_0056380
BY PROTMAP: gi|647399608|emb|CDR44506.1| RHTO0S09e05138g1_1 [Rhodosporidium toruloides]; Belongs to the PI3/PI4-kinase family.
    
   0.875
BN2166_0061330
BY PROTMAP: gi|342321137|gb|EGU13072.1| Ras-2 [Rhodotorula glutinis ATCC 204091].
 
      0.855
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.