STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN2166_0062180FGENESH: predicted gene_13.48 protein. (654 aa)    
Predicted Functional Partners:
BN2166_0021260
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.497
BN2166_0040900
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.497
BN2166_0065150
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.497
BN2166_0036000
annotation not available
    
  0.486
BN2166_0051890
annotation not available
    
 0.486
BN2166_0037470
Uncharacterized protein.
    
  0.486
BN2166_0055220
SKIP/SNW domain-domain containing protein.
    
  0.470
BN2166_0007410
BY PROTMAP: gi|342319302|gb|EGU11251.1| Proteophosphoglycan ppg4 [Rhodotorula glutinis ATCC 204091].
    
 0.469
BN2166_0049550
FGENESH: predicted gene_9.301 protein.
    
 0.469
BN2166_0063740
Uncharacterized protein.
    
 0.469
Your Current Organism:
Rhodotorula toruloides
NCBI taxonomy Id: 5286
Other names: CBS 6016, IFO 8766, IGC 5615, MUCL 28631, NRRL Y-6987, R. toruloides, Rhodosporidium toruloides, Rhodotorula gracilis, Rhodotorula rubescens, Rhodotorula toruloides (I. Banno) Q.M. Wang, F.Y. Bai, M. Groenew. & Boekhout, 2015
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